할로루브럼

할로루브럼
과학적 분류
도메인:	아르케아
킹덤:	에우리아카에오타
망울:	에우리아카에오타
클래스:	할로박테리아
순서:	할로박테리아목
패밀리:	할로박테리아과
속:	할로루브럼; 맥게니티와 그랜트 1996[citation needed]
종
	H. 방조감; H. 알칼리필룸; H. 아르키스; H.캘리포니엔시스; H. 코리엔스; H. 유통; H. 에지노렌스; H. ezzemoulense; H. 코쿠리; H. 라쿠스프로펀디; 활엽수; H. 리토름; 루테움; H. 오리엔탈리스; 사카로보룸; H. Salsolis; H. 소도멘스; H. 테벤키헨세; H. 테레스트레; H. 티벳엔스; H. 트라파니쿰; H. vacuolatum; H. 신장염;
동의어[필요하다]
	핼로루브로박테리움 카메쿠라·다일스미스;

할로루브룸은 할로박테리아과과에 속하는 속이다.할로루브럼 종은 사해, 자부예 호수 등 염분 농도가 높은 바다에서 발견될 수 있다.null

유전적 교환

자연 높은 염분 농도 환경에서 헤로아카이아 할로루브럼의 개체들은 재조합을 통해 유전 정보를 자주 교환했다.^[1]이 인구는 성인구에 접근하는 연결 평형도를 보였다.null

분류학

분류학에서 할로루브룸은 할로박테리아과의 속이다.^[2]null

종

할로루브룸 에지노렌세는 중국 내몽골의 에지노르 호수에서 처음 고립됐다.^[3]null

할로루브럼 라쿠스프로펀디는 1980년대에 남극의 딥 레이크에서 처음으로 고립되었다.^[4]2006년에 배열된 그것의 게놈은 2개의 염색체(2.74Mb, 0.53Mb)와 1개의 플라스미드(0.43Mb)로 구성되어 있다.^[5]그것의 β-갈락토시다아제 효소는 저온, 고살린 환경에서 단백질이 어떻게 기능하는지 이해하기 위해 광범위하게 연구되어 왔다.^[6]^[7]H. lacuspropundi의 한 변종에는 수평 유전자 전이를 위한 플라스미드가 들어 있는데, 이것은 vesicle-enclosed 바이러스 같은 입자를 사용하는 메커니즘을 통해 일어난다.^[8]null

할로루브럼 소도멘스는 1980년 사해에서 처음 확인되었다.성장을 위해 관련 할로파일보다 높은 Mg²⁺ 이온 농도를 필요로 한다.^[9]그것의 세포 표면막은 ATP 합성에 사용되는 양성자 동력을 확립하기 위해 햇빛으로부터 에너지를 얻는 광수용체 단백질인 Archaerhodopsin-3(AR3)를 함유하고 있다.^[10]^[11]AR3 돌연변이는 신경과학 연구를 위한 광유전학에서 도구로 널리 사용된다.^[12]null

할로루브룸 티베트는 중국 티벳의 자부예 호수에서 처음 고립되었다.^[13]null

할로루브럼 신장(Halorubrum genezene)은 중국 신장의 샤오에르쿨레 호수에서 처음 격리됐다.^[14]null

참조

^ Papke RT, Koenig JE, Rodríguez-Valera F, Doolittle WF (December 2004). "Frequent recombination in a saltern population of Halorubrum". Science. 306 (5703): 1928–9. Bibcode:2004Sci...306.1928P. doi:10.1126/science.1103289. PMID 15591201. S2CID 21595153.
^ Halorubrum의 NCBI 웹 페이지를 참조하십시오.에서 추출된 데이터
^ Castillo AM, Gutiérrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A (2007). "Halorubrum Ejinorense Sp. Nov., Isolated From Lake Ejinor, Inner Mongolia, China". International Journal of Systematic and Evolutionary Microbiology. 57 (11): 2538–2542. doi:10.1099/ijs.0.65241-0. PMID 17978215.
^ Franzmann PD, Stacklebrandt E, Sanderson K, Volkman JK, Camberon DE, Stevenson PL, McMeekin TA, Burton HR (1998). "Halobacterium lacusprofundii sp. nov., a halophilic bacterium isolated from Deep Lake, Antarctica". Syst. Appl. Microbiol. 11 (1): 20–27. doi:10.1016/S0723-2020(88)80044-4.
^ Anderson IJ, DasSarma P, Lucas S, Copeland A, Lapidus A, Del Rio T, Tice H, Dalin E, Bruce DC, Goodwin L, Pitluck S, Sims D, Brettin TS, Detter JC, Han CS, Larimer F, Hauser L, Land M, Ivanova N, Richardson P, Cavicchioli R, DasSarma S, Woese CR, Kyrpides (2006). "Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34". Standards in Genomic Sciences. 11 (1): 70. doi:10.1186/s40793-016-0194-2. PMC 5018182. PMID 27617060.
^ Karan R, Capes MD, DasSarma P, DasSarma S (2013). "Cloning, Overexpression, Purification, and Characterization of a Polyextremophilic β-galactosidase From the Antarctic Haloarchaeon Halorubrum lacusprofundi". BMC Biotechnol. 13: 10.1186/1472-6750-13-3. doi:10.1186/1472-6750-13-3. PMC 3556326. PMID 23320757.
^ Laye VJ, Karan R, Kim JM, Pecher WT, DasSarma P, DasSarma S (2017). "Key amino acid residues conferring enhanced enzyme activity at cold temperatures in an Antarctic polyextremophilic β-galactosidase". PNAS. 114 (47): 12530–35. doi:10.1073/pnas.1711542114. PMC 5703305. PMID 29109294.
^ Erdmann S, Tschitschko B, Zhong L, Raftery MJ, Cavicchioli R (9 September 2017). "A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells". Nature Microbiology. 2 (10): 1446–1455. doi:10.1038/s41564-017-0009-2. PMID 28827601. S2CID 38729395.
^ Oren A (1983). "Halobacterium sodomense sp. nov. a Dead Sea Halobacterium with an extremely high magnesium requirement". International Journal of Systematic Bacteriology. 33 (2): 381–386. doi:10.1099/00207713-33-2-381.
^ Ihara K, Umemura T, Katagiri I, Kitajima-Ihara T, Sugiyama Y, Kimura Y, Mukohata Y (January 1999). "Evolution of the archaeal rhodopsins: evolution rate changes by gene duplication and functional differentiation". Journal of Molecular Biology. 285 (1): 163–74. doi:10.1006/jmbi.1998.2286. PMID 9878396.
^ Bada Juarez JF, Judge PJ, Adam S, Axford D, Vinals J, Birch J, Kwan TO, Hoi KK, Yen HY, Vial A, Milhiet PE, Robinson CV, Schapiro I, Moraes I, Watts A (2021). "Structures of the archaerhodopsin 3 transporter reveal that disordering of internal water networks underpins receptor sensitization". Nature Communications. 12 (1): 629. Bibcode:2021NatCo..12..629B. doi:10.1038/s41467-020-20596-0. PMC 7840839. PMID 33504778.
^ Flytzanis NC, Bedbrook CN, Chiu H, Engqvist MK, Xiao C, Chan KY, Sternberg PW, Arnold FH, Gradinaru V (2014). "Archaerhodopsin variants with enhanced voltage-sensitive fluorescence in mammalian and Caenorhabditis elegans neurons". Nature Communications. 5: 4894. Bibcode:2014NatCo...5.4894F. doi:10.1038/ncomms5894. PMC 4166526. PMID 25222271.
^ Fan H, Xue Y, Ma Y, Ventosa A, Grant WD (2004). "Halorubrum tibetense sp. nov., a novel haloalkaliphilic archaeon from Lake Zabuye in Tibet, China". International Journal of Systematic and Evolutionary Microbiology. 54 (4): 1213–1216. doi:10.1099/ijs.0.03032-0. PMID 15280294.
^ Feng J, Zhou PJ, Liu SJ (2004). "Halorubrum xinjiangense sp. nov., a novel halophile isolated from saline lakes in China". International Journal of Systematic and Evolutionary Microbiology. 54 (5): 1789–1791. doi:10.1099/ijs.0.63209-0. PMID 15388744.

추가 읽기

과학저널

Oren A, Ventosa A (2000). "International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Halobacteriaceae. Minutes of the meetings, 16 August 1999, Sydney, Australia". Int. J. Syst. Evol. Microbiol. 50 (3): 1405–1407. doi:10.1099/00207713-50-3-1405. PMID 10843089.
Oren A, Ventosa A (1996). "A proposal for the transfer of Halorubrobacterium distributum and Halorubrobacterium coriense to the genus Halorubrum as Halorubrum distributum comb. nov. and Halorubrum coriense comb. nov., respectively". Int. J. Syst. Bacteriol. 46 (4): 1180. doi:10.1099/00207713-46-4-1180.
McGenity TJ, Grant WD (1995). "Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrumsodomense comb. nov., Halorubrum trapanicum comb. nov., and Halorubrum lacusprofundi comb.nov". Syst. Appl. Microbiol. 18 (2): 237–243. doi:10.1016/s0723-2020(11)80394-2.
Kamekura M, Dyall-Smith ML (1995). "Taxonomy of the family Halobacteriaceae and the description of two new genera Halorubrobacterium and Natrialba". J. Gen. Appl. Microbiol. 41 (4): 333–350. doi:10.2323/jgam.41.333.
Papke T, Fullmer M, Soucy S, Swithers K, Makkay A, Wheeler R, Ventosa A, Gogarten P (11 April 2014). "Population and genomic analysis of the genus Halorubrum". Frontiers in Microbiology. 5 (Article No.: 140): 140. doi:10.3389/fmicb.2014.00140. PMC 3990103. PMID 24782836.

과학 서적

Gibbons, NE (1974). "Family V. Halobacteriaceae fam. nov.". In RE Buchanan; NE Gibbons (eds.). Bergey's Manual of Determinative Bacteriology (8th ed.). Baltimore: The Williams & Wilkins Co. ISBN 0-683-01117-0.

과학 데이터베이스

외부 링크

이 고고학 관련 기사는 단조롭다.위키피디아를 확장하여 도울 수 있다.

[pmid15591201-1] Papke RT, Koenig JE, Rodríguez-Valera F, Doolittle WF (December 2004). "Frequent recombination in a saltern population of Halorubrum". Science. 306 (5703): 1928–9. Bibcode:2004Sci...306.1928P. doi:10.1126/science.1103289. PMID 15591201. S2CID 21595153.

[2] Halorubrum의 NCBI 웹 페이지를 참조하십시오.에서 추출된 데이터

[3] Castillo AM, Gutiérrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A (2007). "Halorubrum Ejinorense Sp. Nov., Isolated From Lake Ejinor, Inner Mongolia, China". International Journal of Systematic and Evolutionary Microbiology. 57 (11): 2538–2542. doi:10.1099/ijs.0.65241-0. PMID 17978215.

[4] Franzmann PD, Stacklebrandt E, Sanderson K, Volkman JK, Camberon DE, Stevenson PL, McMeekin TA, Burton HR (1998). "Halobacterium lacusprofundii sp. nov., a halophilic bacterium isolated from Deep Lake, Antarctica". Syst. Appl. Microbiol. 11 (1): 20–27. doi:10.1016/S0723-2020(88)80044-4.

[5] Anderson IJ, DasSarma P, Lucas S, Copeland A, Lapidus A, Del Rio T, Tice H, Dalin E, Bruce DC, Goodwin L, Pitluck S, Sims D, Brettin TS, Detter JC, Han CS, Larimer F, Hauser L, Land M, Ivanova N, Richardson P, Cavicchioli R, DasSarma S, Woese CR, Kyrpides (2006). "Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34". Standards in Genomic Sciences. 11 (1): 70. doi:10.1186/s40793-016-0194-2. PMC 5018182. PMID 27617060.

[6] Karan R, Capes MD, DasSarma P, DasSarma S (2013). "Cloning, Overexpression, Purification, and Characterization of a Polyextremophilic β-galactosidase From the Antarctic Haloarchaeon Halorubrum lacusprofundi". BMC Biotechnol. 13: 10.1186/1472-6750-13-3. doi:10.1186/1472-6750-13-3. PMC 3556326. PMID 23320757.

[7] Laye VJ, Karan R, Kim JM, Pecher WT, DasSarma P, DasSarma S (2017). "Key amino acid residues conferring enhanced enzyme activity at cold temperatures in an Antarctic polyextremophilic β-galactosidase". PNAS. 114 (47): 12530–35. doi:10.1073/pnas.1711542114. PMC 5703305. PMID 29109294.

[8] Erdmann S, Tschitschko B, Zhong L, Raftery MJ, Cavicchioli R (9 September 2017). "A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells". Nature Microbiology. 2 (10): 1446–1455. doi:10.1038/s41564-017-0009-2. PMID 28827601. S2CID 38729395.

[9] Oren A (1983). "Halobacterium sodomense sp. nov. a Dead Sea Halobacterium with an extremely high magnesium requirement". International Journal of Systematic Bacteriology. 33 (2): 381–386. doi:10.1099/00207713-33-2-381.

[pmid9878396-10] Ihara K, Umemura T, Katagiri I, Kitajima-Ihara T, Sugiyama Y, Kimura Y, Mukohata Y (January 1999). "Evolution of the archaeal rhodopsins: evolution rate changes by gene duplication and functional differentiation". Journal of Molecular Biology. 285 (1): 163–74. doi:10.1006/jmbi.1998.2286. PMID 9878396.

[Bada_Juarez-11] Bada Juarez JF, Judge PJ, Adam S, Axford D, Vinals J, Birch J, Kwan TO, Hoi KK, Yen HY, Vial A, Milhiet PE, Robinson CV, Schapiro I, Moraes I, Watts A (2021). "Structures of the archaerhodopsin 3 transporter reveal that disordering of internal water networks underpins receptor sensitization". Nature Communications. 12 (1): 629. Bibcode:2021NatCo..12..629B. doi:10.1038/s41467-020-20596-0. PMC 7840839. PMID 33504778.

[Flytzanis-12] Flytzanis NC, Bedbrook CN, Chiu H, Engqvist MK, Xiao C, Chan KY, Sternberg PW, Arnold FH, Gradinaru V (2014). "Archaerhodopsin variants with enhanced voltage-sensitive fluorescence in mammalian and Caenorhabditis elegans neurons". Nature Communications. 5: 4894. Bibcode:2014NatCo...5.4894F. doi:10.1038/ncomms5894. PMC 4166526. PMID 25222271.

[13] Fan H, Xue Y, Ma Y, Ventosa A, Grant WD (2004). "Halorubrum tibetense sp. nov., a novel haloalkaliphilic archaeon from Lake Zabuye in Tibet, China". International Journal of Systematic and Evolutionary Microbiology. 54 (4): 1213–1216. doi:10.1099/ijs.0.03032-0. PMID 15280294.

[14] Feng J, Zhou PJ, Liu SJ (2004). "Halorubrum xinjiangense sp. nov., a novel halophile isolated from saline lakes in China". International Journal of Systematic and Evolutionary Microbiology. 54 (5): 1789–1791. doi:10.1099/ijs.0.63209-0. PMID 15388744.

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